Institute of Science Tokyo
Department of Biochemical Pathophysiology · Medical Research Laboratory · Institute of Integrated Research
Department of Lipid Biology · Graduate School of Medical and Dental Sciences

Lipids decoding the mysteries of
life & disease

Centered on the biology of phosphoinositides and other phospholipids, we work to elucidate the molecular mechanisms of cancer, inflammatory and neurodegenerative diseases, and aging. We seek new principles that govern life and aim to translate them into medicine for preventing and curing intractable diseases.

🎓 For prospective graduate students (MSc / PhD) 🎓
Plum blossoms and the M&D Tower at the Yushima campus (spring) Experiment using a mass spectrometer Selected papers from the laboratory The M&D Tower at the Yushima campus (summer) Symposium group photo Research highlights (mass spectrometry, fluorescence staining, model animals, histology) Autumn foliage and the M&D Tower at the Yushima campus (autumn) Members socializing in the laboratory Best Paper Award trophy (Shin Morioka, 2023) Award ceremony at the MRL graduate student research presentation (Yuto Kikuchi and Fubuki Oka, 2024)

News

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Research

From the perspective of phosphoinositide-centered lipid biology, we elucidate the pathology of cancer, inflammatory diseases, and neurodegenerative diseases at the molecular level.

The 3D structure of myo-inositol depicted as a turtle

Phosphoinositides and intractable diseases

Phosphoinositides are trace phospholipids that regulate signal transduction and membrane dynamics inside and outside the cell. Using genetically modified mice for some 50 phosphoinositide-metabolizing enzymes, we elucidate how intractable diseases such as cancer, inflammatory diseases, and neurodegenerative diseases arise and progress.

Discovery of novel lipids and metabolic enzymes

Combining mass spectrometry data with AI and machine learning, we search for unknown lipid molecules that change in disease. We identify the enzymes that produce and degrade them and elucidate their physiological functions and mechanisms of action.

How bioactive lipids work

Lipids are distributed not only in the plasma membrane but also in organelles, the cytosol, and the extracellular environment, where they control biological processes. We elucidate how lipid localization is controlled and how lipid information is read out and converted into cellular responses.

Pathology analysis by lipid profiling

We develop deep mass spectrometry techniques for phospholipids and apply them to clinical specimens of human disease. By analyzing lipid changes associated with disease, genetic abnormalities, lifestyle, and aging, we develop stratification markers.

AMED-CREST project (FY2023–)

Age-related remodeling of phosphoinositides and the essence of aging and disease

We clarify how age-related changes in phosphoinositide metabolism contribute to aging and age-related diseases. Combining genetic analysis with our original lipid-measurement technology, we aim to elucidate the lipid-metabolic mechanisms that control aging and to develop new interventions.

Publications

71 h-index Citations 25,111 (2026.6.1)

Selected papers are listed here. Please see the full list of publications below.

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Research Environment

🎓 For prospective graduate students (MSc / PhD) 🎓

With its designation as a University for International Research Excellence and its robotic experiment support, the laboratory offers a world-class education and research environment.

Designated Jan 2026

University for International
Research Excellence — Science Tokyo

Under MEXT’s University for International Research Excellence program, Institute of Science Tokyo has been formally certified. Supported by the University Fund, it aims to build a world-leading research environment.

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High-precision experiment support

MRL Robotic Experiment Support Office
Center for Robotic Future Creation

A Robotic Experiment Support Office that advances autonomous experimentation with robots and AI. It is an advanced research infrastructure for efficiently performing large-scale, high-precision experiments.

Featured in Nature →
MEXT-certified

Joint Research Center for Intractable Diseases
Joint Usage / Research Center

Certified as a Joint Usage / Research Center for intractable diseases. We actively support collaborative research and shared use of equipment with researchers both within and outside Japan.

MEXT program

Interdisciplinary Research Hub
“Overcoming Multilayered Stress Diseases”

In partnership with the National Center of Neurology and Psychiatry and the Tokyo Metropolitan Institute of Medical Science, we aim to elucidate the pathology of multilayered stress diseases.

Research infrastructure

Cross-University Program for
Strengthening Research Infrastructure

Through the Cross-University Program for Strengthening Research Infrastructure, we are enhancing advanced analytical instruments and technical-education systems.

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Selected FY2023

AMED-CREST
Mechanisms of aging and disease

“Age-related remodeling of phosphoinositides and the essence of aging and disease” was selected for AMED-CREST. We aim to elucidate aging-regulating lipid profiles and to develop methods to control aging.

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Members

Members from diverse backgrounds work together to pursue highly original research.

About 20 faculty, graduate, and undergraduate members — see the full member list →
Learn

Learn

🎓 For prospective graduate students (MSc / PhD) 🎓

We share background and explanations of our research along with a collection of useful links — recommended for students and general readers alike.

🔗 Links →

What are lipids: the three tiers of biomolecules

Biomolecules can be understood as three tiers: genes – proteins – metabolites. Lipids belong to the metabolites and play three roles: membrane formation, energy storage, and signal transduction.

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Functions of phosphoinositides

A group of trace phospholipids in cell membranes. Eight species exist, differing in the phosphorylation pattern of the 3-, 4-, and 5-position hydroxyls of the inositol ring of phosphatidylinositol, and they regulate diverse effector proteins.

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The phosphoinositide metabolic system

In the phosphoinositide metabolic system, about 50 enzymes in humans and mice catalyze interconversion reactions by phosphorylation and dephosphorylation.

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Diseases linked to phosphoinositide metabolism

Abnormalities in phosphoinositide-metabolizing enzyme genes cause cancer, inflammatory, and neurological diseases. We survey the pathologies arising from disrupted phosphoinositide metabolism revealed by genetically modified mouse studies of about 50 enzymes.

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Aging and phosphoinositide remodeling

Using our original measurement technology, we found that phosphoinositide profiles change with age. We aim to identify aging-regulating phosphoinositide species and enzymes and to understand the fundamental mechanisms of aging.

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Decoding lipid–protein interactions with AI

Combining structure-prediction AI with generative AI and statistical analysis, we are developing a new computational–biochemical approach to quantitatively predict and verify lipid–protein binding.

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A short history of phosphoinositide research

From the Hokins’ 1953 discovery to the rediscovery of these lipids in disease — an overview of 70 years of phosphoinositide research.

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PI3-kinase, PTEN, and disease

PI3-kinase generates PI(3,4,5)P3 from PI(4,5)P2, and PTEN catalyzes the reverse reaction. An imbalance between the two is deeply involved in cancer and immune diseases.

Coming soon

Lipid mass spectrometry and lipidomics

Lipids in biological samples such as surgical tissue and blood can be measured with a mass spectrometer. Deep analysis of the hundreds of phosphoinositide species is a major strength of our laboratory.

Coming soon

Contact & Access

🏛️
Address
M&D Tower 19F, Institute of Science Tokyo
1-5-45 Yushima, Bunkyo-ku, Tokyo 113-8510, Japan
✉️
Email
sasaki.t.7eda [at] m.isct.ac.jp
※ Replace [at] with @
🎓
For prospective students
We welcome lab visits at any time. Please contact us by email.

🗺️ Open in Google Maps

Around Ochanomizu Station: the Kanda River where the Tokyo Metro Marunouchi Line and JR Chuo/Sobu Lines cross

🚃 Getting here

1

From JR Ochanomizu Station (Chuo Line Rapid JC03 / Chuo-Sobu Line Local JB18), exit at Ochanomizubashi and cross the Ochanomizu Bridge
or take the Tokyo Metro Marunouchi Line to Ochanomizu Station (M20) and use the ground-level exit (the Ochanomizu Gate is right there).

2

Enter the campus through the Ochanomizu Gate.

3

Keep the multi-story parking garage on your left and walk straight; turn left and the M&D Tower entrance will be ahead on your right.

4

Take the elevator to the 19th floor (Department of Biochemical Pathophysiology).